gms | German Medical Science

Information Retrieval Meeting (IRM 2022)

10.06. - 11.06.2022, Köln

First steps towards an R-based tool to support the development of search strategies for systematic reviews

Meeting Abstract

  • corresponding author presenting/speaker Naomi Fujita-Rohwerder - Institute for Quality and Efficiency in Health Care (IQWiG), Cologne, Germany
  • Claudia Kapp - Institute for Quality and Efficiency in Health Care (IQWiG), Cologne, Germany
  • Elke Hausner - Institute for Quality and Efficiency in Health Care (IQWiG), Cologne, Germany
  • Siw Waffenschmidt - Institute for Quality and Efficiency in Health Care (IQWiG), Cologne, Germany

Information Retrieval Meeting (IRM 2022). Cologne, 10.-11.06.2022. Düsseldorf: German Medical Science GMS Publishing House; 2022. Doc22irm19

doi: 10.3205/22irm19, urn:nbn:de:0183-22irm199

Veröffentlicht: 8. Juni 2022

© 2022 Fujita-Rohwerder et al.
Dieser Artikel ist ein Open-Access-Artikel und steht unter den Lizenzbedingungen der Creative Commons Attribution 4.0 License (Namensnennung). Lizenz-Angaben siehe http://creativecommons.org/licenses/by/4.0/.


Gliederung

Text

Introduction: Information retrieval plays an essential role during the conduct of any systematic review and involves the development of search strategies to allow for a comprehensive search of the literature. Here, an objective approach is increasingly used to identify candidate search terms from a test set of relevant citations [1]. However, this often requires the application of complex text analysis software, which may constitute a barrier for some information specialists. Thus, we aim to develop a fit-for-purpose and easy-to-use tool to support the routine development of high-quality search strategies for systematic reviews.

Methods: Text-analytic procedures were performed using the quanteda package and included calculating simple word frequencies and analysing keywords-in-context [2]. Further, an interactive graphical user interface was developed using the shiny package [3].

Results: We present an overview of the basic functionalities of the current development version of our tool and give a brief live demo of the corresponding “Shiny App” to demonstrate that information specialists do not require programming skills or familiarity with R to execute the underlying R code. Further, we provide a tentative roadmap towards the first stable release and discuss potential upcoming features.

Conclusion: An R-based tool has the potential to facilitate the identification of candidate search terms for objectively derived search strategies.

Keywords: literature search, text and data mining, R


References

1.
Hausner E, Guddat C, Hermanns T, Lampert U, Waffenschmidt S. Prospective comparison of search strategies for systematic reviews: an objective approach yielded higher sensitivity than a conceptual one. J Clin Epidemiol. 2016 Sep;77:118-124. DOI: 10.1016/j.jclinepi.2016.05.002 Externer Link
2.
Kenneth B, Watanabe K, Wang H, et al. quanteda: An R package for the quantitative analysis of textual data. Journal of Open Source Software. 2018;3(30):774. DOI: 10.21105/joss.00774 Externer Link
3.
Chang W, Cheng J, Allaire JJ, et al. shiny: Web Application Framework for R. [accessed online: 16/03/2022]. Available from: https://cran.r-project.org/web/packages/shiny/index.html Externer Link